CoolBox
  • Installation & Usage
  • Quickstart (API)
  • Quickstart (CLI)
  • CoolBox Gallery
    • Colormaps of Hi-C contact map
    • Resolution, Balance and Normalize
    • Smoothing matrix with gaussian filter
    • Hi-C features like Virtual4C, DiScore, InsuScore
    • TADs
    • Peak Coverage
    • Hi-C Diff
    • Differential Chromatin Interaction
    • JointView
    • Hist track styles
    • BigWig Coverage
    • Arcs style
    • Color
    • Arcs coverage
    • SNP Manhattan plot
    • Ideogram
    • DNA features
    • Decay curve
  • Customizing CoolBox
  • API Reference
CoolBox
  • CoolBox Gallery
  • View page source

CoolBox Gallery

Hi-C

Colormaps of Hi-C contact map
Resolution, Balance and Normalize
Smoothing matrix with gaussian filter
Hi-C features like Virtual4C, DiScore, InsuScore
TADs
Peak Coverage
Hi-C Diff
Differential Chromatin Interaction
JointView

Others

Hist track styles
BigWig Coverage
Arcs style
Arcs coverage
SNP Manhattan plot
Ideogram
DNA features

Auxiliary functions

Decay curve
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