Index

A

add_track() (coolbox.core.frame.Frame method) append_coverage() (coolbox.core.track.Track method)

Arcs() (in module coolbox.core.track) ArcsBase (class in coolbox.core.track) ArcsCoverage (class in coolbox.core.coverage)

B

BAM (class in coolbox.core.track) BAMCov (class in coolbox.core.track) BED (class in coolbox.core.track) BedBase (class in coolbox.core.track) BedGraph (class in coolbox.core.track)

BedGraphCoverage (class in coolbox.core.coverage) BEDPE (class in coolbox.core.track) BEDPECoverage (class in coolbox.core.coverage) BigWig (class in coolbox.core.track) BigWigCoverage (class in coolbox.core.coverage) Browser (class in coolbox.core.browser)

C

check_chrom_name() (coolbox.core.track.Track method) ChromName (class in coolbox.core.track) clear_fig_cache() (coolbox.core.browser.Browser method) Color (class in coolbox.core.feature) ColorMap (class in coolbox.core.feature) Cool (class in coolbox.core.track) coolbox.core.browser module coolbox.core.coverage module coolbox.core.feature module

coolbox.core.frame module coolbox.core.frame.superframe module coolbox.core.track module coolbox.utilities module CoolStyle (class in coolbox.core.feature) correspond_track() (in module coolbox.utilities)

D

DepthRatio (class in coolbox.core.feature)

DiScore (class in coolbox.core.track) DotHiC (class in coolbox.core.track)

F

Feature (class in coolbox.core.feature) fetch_data() (coolbox.core.frame.superframe.JointView method) (coolbox.core.track.ArcsBase method) (coolbox.core.track.BAM method) (coolbox.core.track.BAMCov method) (coolbox.core.track.BedBase method) (coolbox.core.track.BedGraph method) (coolbox.core.track.BigWig method) (coolbox.core.track.ChromName method) (coolbox.core.track.Cool method) (coolbox.core.track.DiScore method) (coolbox.core.track.DotHiC method) (coolbox.core.track.GTF method) (coolbox.core.track.HiCDiff method) (coolbox.core.track.HicMatBase method) (coolbox.core.track.HistBase method) (coolbox.core.track.HLine method) (coolbox.core.track.Ideogram method) (coolbox.core.track.InsuScore method) (coolbox.core.track.Selfish method) (coolbox.core.track.SNP method) (coolbox.core.track.Spacer method) (coolbox.core.track.Track method) (coolbox.core.track.Virtual4C method) (coolbox.core.track.XAxis method)

fetch_intervals() (coolbox.core.track.BedBase method) (coolbox.core.track.GTF method) fetch_pixels() (coolbox.core.track.Cool method) (coolbox.core.track.DotHiC method) fetch_plot_data() (coolbox.core.track.BedGraph method) (coolbox.core.track.BEDPE method) (coolbox.core.track.BigWig method) (coolbox.core.track.HicMatBase method) (coolbox.core.track.HistBase method) (coolbox.core.track.SNP method) (coolbox.core.track.Track method) format_properties() (in module coolbox.utilities) Frame (class in coolbox.core.frame) FrameFeature (class in coolbox.core.feature) FrameTitle (class in coolbox.core.feature)

G

get_init_range() (coolbox.core.browser.Browser method)

get_tracks_height() (coolbox.core.frame.Frame method) GTF (class in coolbox.core.track)

H

HiCDiff (class in coolbox.core.track) HiCMat() (in module coolbox.core.track) HicMatBase (class in coolbox.core.track) HiCPeaks (class in coolbox.core.track) HiCPeaksCoverage (class in coolbox.core.coverage) HighLights (class in coolbox.core.coverage)

HighLightsFromFile (class in coolbox.core.coverage) Hist() (in module coolbox.core.track) HistBase (class in coolbox.core.track) HistCoverage (class in coolbox.core.coverage) HistStyle (class in coolbox.core.feature) HLine (class in coolbox.core.track) HLines (class in coolbox.core.coverage)

I

Ideogram (class in coolbox.core.track)

InsuScore (class in coolbox.core.track) Inverted (class in coolbox.core.feature)

J

JointView (class in coolbox.core.frame.superframe)

M

MaxValue (class in coolbox.core.feature) MinValue (class in coolbox.core.feature) module coolbox.core.browser coolbox.core.coverage coolbox.core.feature coolbox.core.frame coolbox.core.frame.superframe coolbox.core.track coolbox.utilities

O

op_err_msg() (in module coolbox.utilities)

P

Pairs (class in coolbox.core.track) PairsCoverage (class in coolbox.core.coverage) pile_coverages() (coolbox.core.track.Track method) plot() (coolbox.core.frame.Frame method) (coolbox.core.frame.superframe.JointView method) (coolbox.core.track.ArcsBase method) (coolbox.core.track.BAM method) (coolbox.core.track.BED method) (coolbox.core.track.ChromName method) (coolbox.core.track.GTF method) (coolbox.core.track.HicMatBase method) (coolbox.core.track.HistBase method) (coolbox.core.track.HLine method) (coolbox.core.track.Ideogram method) (coolbox.core.track.Spacer method) (coolbox.core.track.TAD method) (coolbox.core.track.Track method) (coolbox.core.track.XAxis method)

plot_coverages() (coolbox.core.track.Track method) preload_imgs() (coolbox.core.browser.Browser method)

R

refresh() (coolbox.core.browser.Browser method)

S

save() (coolbox.core.browser.Browser method) Selfish (class in coolbox.core.track) set_colormap() (coolbox.core.track.BedBase method) show() (coolbox.core.browser.Browser method) (coolbox.core.frame.Frame method)

ShowColorBar (class in coolbox.core.feature) ShowDataRange (class in coolbox.core.feature) SNP (class in coolbox.core.track) Spacer (class in coolbox.core.track)

T

TAD (class in coolbox.core.track) TADCoverage (class in coolbox.core.coverage)

Title (class in coolbox.core.feature) Track (class in coolbox.core.track) TrackHeight (class in coolbox.core.feature)

V

Virtual4C (class in coolbox.core.track)

Vlines (class in coolbox.core.coverage) VlinesFromFile (class in coolbox.core.coverage)

W

WidgetsPanel (class in coolbox.core.browser)

X

XAxis (class in coolbox.core.track)