Welcome to CoolBox’s documentation!

Project page: GitHub

• Installation & Usage
  • Install CoolBox
  • Usage
• Quickstart (API)
  • Data preparation
  • Track is the basic element
  • Compose Tracks to Frame
  • Adjust Tracks and Frame with Feature
  • Coverage
  • Explore Genomic Data with coolbox.api.Browser
  • Fetch precise data use .fetch_data API
  • Taken together
• Quickstart (CLI)
  • Check the basic information
  • Example Dataset
  • Compose Frame
  • Start a browser
  • Load custom module
• CoolBox Gallery
  • Colormaps of Hi-C contact map
  • Resolution, Balance and Normalize
  • Smoothing matrix with gaussian filter
  • Hi-C features like Virtual4C, DiScore, InsuScore
  • TADs
  • Peak Coverage
  • Hi-C Diff
  • Differential Chromatin Interaction
  • JointView
  • Hist track styles
  • BigWig Coverage
  • Arcs style
  • Color
  • Arcs coverage
  • SNP Manhattan plot
  • Ideogram
  • DNA features
  • Decay curve
• Customizing CoolBox
  • Custom Track
  • Custom Coverage
  • Custom Feature
  • Peakachu
• API Reference
  • Track
  • Coverage
  • Feature
  • Frame
  • JointView
  • Browser
  • Utilities